I've sorted the list out by the group it's on, what line it's on, and the distance from Flinders Street station in Melbourne.
You may notice some have 'slated for removal' next to the road name. This indicates that this crossing is one of the 50 to be removed by the Andrews Government. 'Tramsquare' means that trams cross at grade with train tracks.
COLOR KEY:
Crossings in red indicates crossing has been grade separated.
Crossings in blue indicates bell has been replaced with an E-Bell.
Crossings in green indicates that I'm unsure if it's still there.
CAULFIELD GROUP
Sandringham Line
- Union Street, Windsor (Westinghouse Hybrid & Safetran Mechanical bell, replaced August 2016)
- Glen Eira Road, Ripponlea (Westinghouse Hybrid & Safetran Mechanical bell, replaced August 2016)
- Hampton Street, Hampton (Westinghouse Hybrid x2, replaced August 2016)

Frankston Line
- North Road, Ormond (Westinghouse Hybrid x2, grade separated June-July 2016)
- Centre Road, Bentleigh (Westinghouse Hybrid x2, grade separated June-July 2016)
- Eel Race Road, Carrum (Westinghouse Hybrid x2, slated for removal for some reason)
- Armstrongs Road, Seaford (Westinghouse Hybrid x2, replaced January 2016)
- Seaford Road, Seaford (Westinghouse Hybrid x2, slated for removal, replaced January 2016)
- Skye/Overton Road, Frankston (Westinghouse Hybrid x2, slated for removal)
- Moorooduc Highway, Frankston (Westinghouse Hybrid x2)
- Hillcrest Road, Frankston (Westinghouse Hybrid x2)
- Robinsons Road, Langwarrin (Westinghouse Hybrid x2)
- Golf Links Road, Langwarrin South (Westinghouse Hybrid x2)
- Frankston - Flinders Road, Baxter (Westinghouse Hybrid x2)
- Eramosa Road West, Somerville (Westinghouse Hybrid x2)
- Frankston - Flinders Road, Hastings (Westinghouse Hybrid x2)
- Grange Road, Carnegie (Westinghouse Hybrid x2, slated for removal. A McK&H Teardrop bell was replaced with a hybrid at this crossing between July 2013-June 2014)
- Clayton Road, Clayton (Westinghouse Hybrid x2, slated for removal)
- Centre Road, Clayton (Westinghouse Hybrid x2, slated for removal)
- Corrigan Road, Noble Park (Westinghouse Hybrid x2, slated for removal, oddly replaced April 2017. There's was also a disused teardrop bell at this crossing before it's removal)
- Chandler Road, Noble Park (Westinghouse Hybrid x2, grade separated January-February 2018)

Pakenham Line
- Webster Street, Dandenong (Westinghouse Hybrid x2)
- South Gippsland Highway, Dandenong South (Westinghouse Hybrid x2, slated for removal)
- Progress Street, Dandenong South (Westinghouse Hybrid x2, replaced by June 2016)
- Hallam South Road, Hallam (Westinghouse Hybrid x2, slated for removal)
- Brunt Road, Officer (Westinghouse Hybrid x2)
- Station Street, Officer (Westinghouse Hybrid x2)
- Cardinia Road, Pakenham (Westinghouse Hybrid x2, replaced June 2016)
- Main Street, Pakenham (Westinghouse Hybrid x2, replaced December 2017)
- Racecourse Road, Pakenham (Westinghouse Hybrid x2)
- Greens Road, Dandenong South (Westinghouse Hybrid x2)
- Abbotts Road, Dandenong South (Westinghouse Hybrid x2, slated for removal)
- Thompsons Road, Cranbourne North (Westinghouse Hybrid x2, slated for removal)
- Camms Road, Cranbourne (Westinghouse Hybrid x2)
Werribee and Willamstown Lines (Between Footscray and Newport)
- Hudsons Road, Spotswood (Westinghouse Hybrid x2)
- Aviation Road, Laverton (Westinghouse Hybrid x2, slated for removal)
- Old Geelong Road, Hoppers Crossing (Westinghouse Hybrid x2)
- Cherry Street, Werribee (Westinghouse Hybrid x2, slated for removal)
- Kororoit Creek Road, Williamstown North (Westinghouse Hybrid x2, slated for removal)
- Maidstone Street, Altona (Westinghouse Hybrid x2, replaced March 2017)
Both crossings have E-Bells (One from General Signals, the other from Barker Technics)
Sunbury Line
- Main Road, St Albans (Westinghouse Hybrid x2, grade separated October 2016)

Cragieburn Line
- Buckley Street, Essendon (Westinghouse Hybrid x2, slated for removal)
- Glenroy Road, Glenroy (Westinghouse Hybrid x2, slated for removal)
This special events & stabling line only has one crossing (Ascot Vale Road) and it has E-Bells.
Upfield Line
- Arden Street, North Melbourne (Westinghouse Hybrid x2)
- Macaulay Road, North Melbourne (Westinghouse Hybrid x2)
- Poplar Road, Parkville (Westinghouse Hybrid x2)
- Bell Street, Coburg (Westinghouse Hybrid x2, slated for removal, stupidly replaced in late 2017)
- Boundary Road, Hadfield (Westinghouse Hybrid x2)
- Camp Road, Campbellfield (Westinghouse Hybrid x2, grade separated November-December 2017)
South Morang and Hurstbridge Lines (Between Jolimont and Clitfton Hill)
Only one crossing on this segment (Ramsden Street) and it has Baker Technics E-Bells.
South Morang Line
- Oakover Road, Preston (Westinghouse Hybrid x2, has B&W gate too!)
- Murray Road, Preston (Westinghouse Hybrid x2)
- High Street, Reservoir (Westinghouse Hybrid x2, slated for removal, oddly replaced between April & July 2017)
- Keon Parade, Reservoir (Westinghouse Hybrid x4, the middle two don't sound)
- Marshall Street, Ivanhoe (Westinghouse Hybrid & McK&H Teardrop bell, sadly replaced in February 2017)
- Allendale Road, Eltham (Westinghouse Hybrid x2)
- Main Hurstbridge Road, Diamond Creek (Westinghouse Hybrid x2)
Belgrave and Lilydale Lines (Between Camberwell and Ringwood)
100% E-Bells. All of which are from General Signals, with the exception of Mont Albert Road, Mont Albert (which has Barker Technics E-Bells), Blackburn Road, Blackburn was the last crossing with mechanical bells (Westinghouse Hybrid & McK&H Teardrop bell), which were replaced with E-Bells in mid-2014. (Even then, the crossing was later removed by Daniel Andrews). Additionally, Rooks Road, Mitchan (Westinghouse Hybrid x2) and Mitcham Road, Mictham (Westinghouse Hybrid & Safetran Mechanical Bell) were removed earlier that year.
Belgrave Line
- Bedford Road, Ringwood (Westinghouse Hybrid x2)
- Mountain Highway, Bayswater (Westinghouse Hybrid x2, grade separated November-December 2016)
- Hilltop Road, Upper Ferntree Gully (Westinghouse Hybrid x2, replaced late 2017)
100% E-Bells.

Glen Waverley Line
- Glenferrie Road, Kooyong (Westinghouse Hybrid x2, tramsquare)
- Toorak Road, Kooyong (Westinghouse Hybrid x2, slated for removal. Hybrid's sound horrible at this crossing.)
- Burke Road, Glen Iris (Westinghouse Hybrid x3, tramsquare, grade separated January 2016)
Both crossings have E-Bells. Prospect Hill Road uses General Signals' ones, while Riversdale Road uses Barker Technics E-Bells. The latter is also a tramsquare.
Total amount of crossings with M-Bells: 41
Total Unconfirmed: 0
Total at the start of 2016: 62
Total Grade Separated (2016): 5
Total Replaced (2016): 7
Total at the start of 2017: 50
Total Grade Separated (2017): 1
Total Replaced (2017): 7
Total at the start of 2018: 42
Total Grade Separated (2018): 1
Total Replaced (2018): 0